Yeh YC*, Chu PY, Lin SY, Wang SY, Ho HL, Wang YC*
Comprehensive genomic and transcriptomic analysis of sclerosing pneumocytoma
Modern Pathology, 37(1):100354
2024
journalJeng KS, Cheng PY, Lin YH, Liu PC, Tseng PH, Wang YC, Chang CF, Leu CM*
Aldo-keto reductase family member C3 (AKR1C3) promotes hepatocellular carcinoma cell growth by producing prostaglandin F2α
Oncology Research, 32(1):163-174
2024
journalChen PA, Chang PC, Yeh WW, Hu TY, Hong YC, Wang YC, Huang WJ, Lin TP*
The lncRNA TPT1-AS1 promotes the survival of neuroendocrine prostate cancer cells by facilitating autophagy
American Journal of Cancer Research, 14(5):2103-2123
2024
journalHii LA, Hsu YT, Yeh YC, Wang YC
Investigation of the genomic landscape of internal tandem duplication (ITD) in tumor
2024 SMBE Regional Meeting in Taiwan, Taipei, Taiwan, March 28-30, 2024
2024
conferenceLien JY, Lin SF, Wang YC
Exploring potential methylation markers for ovarian cancer by cervical scraping samples
2024 SMBE Regional Meeting in Taiwan, Taipei, Taiwan, March 28-30, 2024
2024
conferenceHii LA, Hsu YT, Yeh YC, Wang YC
Investigation of the genomic landscape of internal tandem duplication (ITD) in tumors
The 32nd International Conference on Intelligent Systems for Molecular Biology (ISMB 2024), Montreal, Canada, July 12-16, 2024
2024
conferenceWang SC, Wang YC
Investigation of homologous recombination deficiency (HRD) based on next-generation sequencing data
The 32nd International Conference on Intelligent Systems for Molecular Biology (ISMB 2024), Montreal, Canada, July 12-16, 2024
2024
conferenceLien JY, Wang YC
Exploring potential methylation markers for ovarian cancer by cervical scraping samples
The 32nd International Conference on Intelligent Systems for Molecular Biology (ISMB 2024), Montreal, Canada, July 12-16, 2024
2024
conferenceWu, WS, Wang YC
A Comprehensive Study of Novel Protein Markers and Their Potential Implications in Aging Research
Annual Biology Conference, Proceedings of ABC
2023
conferenceChen TH, Chen MH, Hung YP, Chiang NJ, Huang KH, Lin YH, Lin RW, Chao Y, Li AF, Yu HY, Huang HE, Yeh YC, Wang YC*, Fang WL*
Elevated PD-L1 expression and microsatellite instability in elderly patients with gastric cancer
Journal of Immunotherapy, 46(3):111-119
2023
journalChang JW, Huang CJ, Huang WK, Wang YC, Hsieh JJ, Chang YY, Huang YL, Wu CL, Wang YH, Chen SJ, Tan KT, Chen CP, Wu CE*
Genomic and tumour microenvironmental biomarkers of immune checkpoint inhibitor response in advanced Taiwanese melanoma
Clinical & Translational Immunology, 12(8):e1465
2023
journalLin WY, Wang YC
Exploring the association between calcium ion binding genes and tumor mutation burden
International Symposium on Evolutionary Genomics and Bioinformatics 2023 (ISEGB 2023), Hsinchu, Taiwan, June 29-30, 2023
2023
conferenceHsu YT, Yeh YC, Huang CJ, Wang YC
Investigation of internal tandem duplication (ITD) across different cancer types
International Symposium on Evolutionary Genomics and Bioinformatics 2023 (ISEGB 2023), Hsinchu, Taiwan, June 29-30, 2023
2023
conferenceLin WY, Wang YC
Exploring the association between calcium ion binding genes and tumor mutation burden
The 31st Annual Intelligent Systems For Molecular Biology and the 22nd Annual European Conference on Computational Biology (ISMB/ECCB 2023), Lyon, France, July 23-27, 2023
2023
conferenceHsu YT, Yeh YC, Huang CJ, Wang YC
Investigation of internal tandem duplication (ITD) across different cancer types
The 31st Annual Intelligent Systems For Molecular Biology and the 22nd Annual European Conference on Computational Biology (ISMB/ECCB 2023), Lyon, France, July 23-27, 2023
2023
conferenceHuang CJ, Yeh YC, Wang YC
Characterization of lung adenosquamous carcinoma with genomics analysis
The 31st Annual Intelligent Systems For Molecular Biology and the 22nd Annual European Conference on Computational Biology (ISMB/ECCB 2023), Lyon, France, July 23-27, 2023
2023
conferenceLiu GT, Wang YC
Construction of immune hot/cold tumor classification model for gastrointestinal cancers
2023 Multiomics and Precision Medicine Joint Conference (MOPM 2023), Taipei, Taiwan, November 11-12, 2023
2023
conferenceYu HY, Li CP, Huang YH, Hsu SJ, Wang YP, Hsieh YC, Fang WL, Huang KH, Li AF, Lee RC, Lee KL, Wu YH, Lai IC, Yang WC, Hung YP, Wang YC, Chen SH, Chen MH*, Chao Y*
Microsatellite instability, Epstein–Barr virus, and programmed cell death ligand 1 as predictive markers for immunotherapy in gastric cancer
Cancers, 14(1):218
2022
journalPan CC*, Tseng CE, Kuroda N, Yano M, Yasuda M, Nagashima Y, Yeh YC, Wang YC, Chang YH, Epstein JI
Molecular characterization of metanephric adenoma, epithelial Wilms tumor and overlap lesions: An integrated whole exome and transcriptome sequencing analysis
Applied Immunohistochemistry & Molecular Morphology, 30(4):257-263
2022
journalSanmarco LM†, Chao CC†, Wang YC†, Kenison JE†, Li Z, Rone JM, Rejano-Gordillo CM, Polonio CM, Gutierrez-Vazquez C, Piester G, Plasencia A, Li L, Giovannoni F, Lee HG, Faust Akl C, Wheeler MA, Mascanfroni I, Jaronen M, Alsuwailm M, Hewson P, Yeste A, Andersen BM, Franks DG, Huang CJ, Ekwudo M, Tjon EC, Rothhammer V, Takenaka M, de Lima KA, Linnerbauer M, Guo L, Covacu R, Queva H, Fonseca-Castro PH, Bladi MA, Cox LM, Hodgetts KJ, Hahn ME, Mildner A, Korzenik J, Hauser R, Snapper SB, Quintana FJ*
Identification of environmental factors that promote intestinal inflammation
Nature, 611(7937):801-809
2022
journalLai WJ†, Lo SJ†, Yang TH†, Huang JY, Wang YC*
Mutations in the RNA exosome gene EXOSC10 cause retinitis pigmentosa in humans and zebrafish
PLoS Biology, 19(6):e3001323
2021
journalChiu TY, Lin RW, Huang CJ, Yeh DW, Wang YC*
DNA damage repair gene set as a potential biomarker for stratifying patients with high tumor mutational burden
Biology (Basel), 10(6):528
2021
journalHuang CJ, Wang LH, Wang YC*
Identification of therapeutic targets for the selective killing of HBV-positive hepatocytes
Journal of Personalized Medicine, 11(7):649
2021
journalYeh YC, Ho HL, Lin CI, Chou TY, Wang YC*
Whole-exome sequencing of Epstein–Barr virus-associated pulmonary carcinoma with low lymphocytic infiltration reveals molecular features similar to those of classic pulmonary lymphoepithelioma-like carcinoma: Evidence to support grouping together as one disease entity
American Journal of Surgical Pathology, 45(11):1476-1486
2021
journalLin YY†, Wang YC†, Yeh DW, Hung CY, Yeh YC, Ho HL, Mon HC, Chen MY, Wu YC, Chou TY*
Gene expression profile in primary tumor is associated with brain-tropism of metastasis from lung adenocarcinoma
International Journal of Molecular Sciences, 22(24):13374
2021
journalYeh YC, Ho HL, Wu YC, Pan CC, Wang YC*, Chou TY*
AKT1 internal tandem duplications and point mutations are the genetic hallmarks of sclerosing pneumocytoma
Modern Pathology, 33(3):391-403
2020
journalHuang CJ, Wang YC
Identification of the therapeutic targets for selective killing of HBV-positive hepatocytes
The 17th Asia Pacific Bioinformatics Conference (APBC2019), Wuhan, China, January 14-16, 2019
2019
conferenceChiu TY, Wang YC
Investigation of the association between the mutational landscape of DNA damage repair genes with high tumor mutational burden in different cancers
2019 The 34th Joint Annual Conference of Biomedical Science, Taipei, Taiwan, March 23-24, 2019
2019
conferenceChang YC, Wang YC
Investigation of the influencing factors of microsatellite instability (MSI) status across different cancer types
2019 The 34th Joint Annual Conference of Biomedical Science, Taipei, Taiwan, March 23-24, 2019
2019
conferenceHuang WN, Wang YC
Classification of cancer subtypes using the cell populations of tumor infiltrating lymphocytes
2019 The 34th Joint Annual Conference of Biomedical Science, Taipei, Taiwan, March 23-24, 2019
2019
conferenceYeh DW, Chiu TY, Chang YC, Yeh YC, Chen MH, Wang YC
Investigation of the association between mutational landscape of DNA repair genes and treatment response to cancer immunotherapy
The 27th International Conference on Intelligent Systems for Molecular Biology (ISMB 2019), Basel, Switzerland, July 21-25, 2019
2019
conferenceLyu GY, Yeh YH, Yeh YC*, Wang YC*
Mutation load estimation model as a predictor of the response to cancer immunotherapy
npj Genomic Medicine, 3:12
2018
journalYeh DW, Wang YC
Identification of high mutation load associated genes and pathways across different cancers
The 23rd Biophysics Conference, Taichung, Taiwan, May 23-25, 2018
2018
conferenceYeh YC, Lei HJ, Chen MH, Ho HL, Chiu LY, Li CP, Wang YC*
C-reactive protein (CRP) is a promising diagnostic immunohistochemical marker for intrahepatic cholangiocarcinoma and is associated with better prognosis
American Journal of Surgical Pathology, 41(12):1630-1641
2017
journalLyu GY, Yeh YC, Wang YC
Construction of mutation burden prediction model for predicting efficacy of cancer immunotherapy
The Fifteenth Asia Pacific Bioinformatics Conference (APBC2017), Shenzhen, China, January 16-18, 2017
2017
conferenceWu CT, Wang YC
Identification of potential disease genes for lung adenocarcinoma using integrated omics data analysis
The 22nd Biophysics Conference, Kaohsiung, Taiwan, May 17-20, 2017
2017
conferenceWang YC, Lyu GY, Yeh YC
Identification of genomic predictors for treatment response to cancer immunotherapy
The 25th International Conference on Intelligent Systems for Molecular Biology (ISMB 2017), Prague, Czech, July 21-25, 2017
2017
conferenceWang YC, Lyu GY, Yeh YC
Mutation load estimation model as a predictor for cancer immunotherapy treatment response
The 76th Annual Meeting of the Japanese Cancer Association (JCA 2017), Yokohama, Japan, September 28-30, 2017
2017
conferenceChiu LY, Yeh YC, Wang YC
Identification of potential diagnostic biomarkers and carcinogenesis-associated gene modules for cholangiocarcinoma based on integrative analysis of gene expression data
The 21st Biophysics Conference, Hsinchu, Taiwan, May 19-21, 2016
2016
conferenceChen TY, Wang YC
Investigating the functions of unannotated genes using LINCS L1000 big data
The 21st Biophysics Conference, Hsinchu, Taiwan, May 19-21, 2016
2016
conferenceHu CW, Hsu CL, Wang YC, Ishihama Y, Ku WC, Huang HC*, Juan HF*
Temporal phosphoproteome dynamics induced by an ATP synthase inhibitor citreoviridin
Molecular & Cellular Proteomics, 14(12):3284-3298
2015
journalYang PJ, Chen BS, Wang YC
Construction of characterized synthetic libraries for gene circuit design with design specifications
2015 The 30th Joint Annual Conference of Biomedical Science, Taipei, Taiwan, March 21-22, 2015
2015
conferenceLu HY, Sun CT, Chuang YJ, Lan CY, Chen BS, Wang YC
Systems biology analysis of Candida albicans facing innate and adaptive immunity
2015 The 30th Joint Annual Conference of Biomedical Science, Taipei, Taiwan, March 21-22, 2015
2015
conferenceYang TH, Wang CC, Wang YC, Wu WS*
YTRP: a repository for yeast transcriptional regulatory pathways
Database: The Journal of Biological Databases and Curation, 2014:bau014
2014
journalWang YC†*, Tsai IC†, Lin C, Hsieh WP, Lan CY, Chuang YJ, Chen BS*
Essential functional modules for pathogenic and defensive mechanisms in Candida albicans infections
BioMed Research International, 2014:136130
2014
journalLin C*, Lin CN, Wang YC, Liu FY, Chuang YJ, Lan CY, Hsieh WP, Chen BS
The role of TGF-β signaling and apoptosis in innate and adaptive immunity in zebrafish: a systems biology approach
BMC Systems Biology, 8:116
2014
journalLin C*, Lin CN, Wang YC, Liu FY, Chien YW, Chuang YJ, Lan CY, Hsieh WP, Chen BS
Robustness analysis on interspecies interaction network for iron and glucose competition between Candida albicans and zebrafish during infection
BMC Systems Biology, 8(Suppl 5):S6
2014
journalWu CH, Lin YH, Hsu CL, Wang YC, Lin WC, Juan HF, Huang HC
Identification of lncRNA-regulated protein-protein interaction networks and their functions
The 19th Biophysics Conference, Tainan, Taiwan, May 7-10, 2014
2014
conferenceHsu MJ, Wang YC, Juan HF, Huang HC
Characterization and stratification of lncRNA and ceRNA modulation networks
The 19th Biophysics Conference, Tainan, Taiwan, May 7-10, 2014
2014
conferenceWang YC, Lin C, Hsieh WP, Lan CY, Chuang YJ, Chen BS
Integrative network analysis of Candida albicans-zebrafish interaction
The 22nd International Conference on Intelligent Systems for Molecular Biology (ISMB 2014), Boston, USA, July 13-15, 2014
2014
conferenceHu CW, Hsu CL, Wang YC, Ishihama Y, Ku WC, Huang HC, Juan HF
Temporal phosphoproteome dynamics reveal response pathways of ectopic ATP synthase blockade
The 73rd Annual Meeting of the Japanese Cancer Association, Yokohama, Japan, September 25-27, 2014
2014
conferenceYu WH, Wang YC, Juan HF, Huang HC
Network-based identification and stratification of lncRNA modulation network with ceRNA hypothesis
TPS2014 Translational and Systems Biology Symposium, Taipei, Taiwan, November 11-12, 2014
2014
conferenceLin C, Lin CN, Wang YC, Liu FY, Chien YW, Chuang YJ, Lan CY, Hsieh WP, Chen BS
Robustness analysis on interspecies interaction network for iron and glucose competition between Candida albicans and zebrafish during infection
GIW / ISCB-Asia 2014, Tokyo, Japan, December 15-17, 2014
2014
conferenceChen BS and Wang YC
Synthetic Gene Network: Modeling, Analysis and Robust Design Methods
CRC Press,
2014
bookWang YC, Lin C, Chuang MT, Hsieh WP, Lan CY, Chuang YJ, Chen BS*
Interspecies protein-protein interaction network construction for characterization of host-pathogen interactions: a Candida albicans-zebrafish interaction study
BMC Systems Biology, 7:79
2013
journalWang YC, Huang SH, Lan CY, Chen BS*
Prediction of phenotype-associated genes via a cellular network approach: a Candida albicans infection case study
PLoS ONE, 7(4):e35339
2012
journalWang YC, Tsai IC, Chao CC, Lin C, Hsieh WP, Lan CY, Chuang YJ, Chen BS
Differential network analysis reveals essential functional modules in Candida albicans infections
The 13th International Conference on Systems Biology (ICSB 2012), Toronto, Canada, August 19-23, 2012
2012
conferenceWang YC, Chen BS*
A network-based biomarker approach for molecular investigation and diagnosis of lung cancer
BMC Medical Genomics, 4:2
2011
journalChen BS*, Chang CH, Wang YC, Wu CH, Lee HC
Robust model matching design methodology for a stochastic synthetic gene network
Mathematical Biosciences, 230(1):23-36
2011
journalWang YC, Chen BS
Molecular investigation and diagnosis of lung cancer via the network-based biomarker
The 8th Asian Control Conference, Kaohsiung, Taiwan, May 15-18, 2011
2011
conferenceWang YC, Lan CY, Hsieh WP, Murillo L, Agabian N, Chen BS*
Global screening of potential Candida albicans biofilm-related transcription factors via network comparison
BMC Bioinformatics, 11:53
2010
journalWang YC, Chen BS*
Integrated cellular network of transcription regulations and protein-protein interactions
BMC Systems Biology, 4:20
2010
journalYang SK†, Wang YC†, Chao CC, Chuang YJ, Lan CY, Chen BS*
Dynamic cross-talk analysis among TNF-R, TLR-4 and IL-1R signalings in TNFα-induced inflammatory responses
BMC Medical Genomics, 3:19
2010
journalChen BS*, Chang YT, Wang YC
Robust H∞-stabilization design in gene networks under stochastic molecular noises: fuzzy-interpolation approach
IEEE Transactions on System, Man and Cybernetics Part B: Cybernetics, 38(1):25-42
2008
journalChang YH, Wang YC, Chen BS*
Nonlinear dynamic trans/cis regulatory circuit for gene transcription via microarray data
Gene Regulation and Systems Biology, 1:151-166
2007
journalChen BS*, Wu WS, Wang YC, Li WH
On the robust circuit design schemes of biochemical networks: steady-state approach
IEEE Transactions on Biomedical Circuits and Systems, 1(2):91-104
2007
journalChen BS*, Wang YC
On the attenuation and amplification of molecular noise in genetic regulatory networks
BMC Bioinformatics, 7:52
2006
journalChang YH†, Wang YC†, Chen BS*
Identification of transcription factor cooperativity via stochastic system model
Bioinformatics, 22(18):2276-2282
2006
journalWang YC, Chen BS
Robust PI regulation control in metabolic pathway
Cold Spring Harbor Laboratory Meeting – Engineering Principles in Biological Systems, New York, USA, December 3-6, 2006
2006
conferenceChen BS*, Wang YC, Wu WS, Li WH
A new measure of robustness of biochemical networks
Bioinformatics, 21(11):2698-2705
2005
journal